PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.072940.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 170aa    MW: 19137.5 Da    PI: 6.0432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.072940.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-1279128355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++  rE++RRd++N++f eL  +l +    + +K +K++iL  A++ + +Lq
  Cucsa.072940.3  79 TSKACREKQRRDKLNERFLELAAVLEPG---KPPKSDKVAILSDAIRMMTDLQ 128
                     67889**********************9...99****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1377146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1379150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-879132No hitNo description
SMARTSM003533.1E-982133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDNPPPNWNW LFDYSTVDDL AVVDPRFSPP QSISFSWSNP SINFLSKDSL EVDCSYEDLD  60
STKEVGRKRL RGETSAASTS KACREKQRRD KLNERFLELA AVLEPGKPPK SDKVAILSDA  120
IRMMTDLQCE TQKLRESKED LKAKIKELKV ESRERKVGAA NQSSEHSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571GRKRLRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819166e-83LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132656e-83LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151873.11e-107PREDICTED: transcription factor ILR3
TrEMBLA0A0A0LQH81e-107A0A0A0LQH8_CUCSA; Uncharacterized protein
STRINGVIT_12s0059g02650.t015e-50(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-39bHLH family protein